CMUSchwartzLab
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cancer-phylogenetics-prognostic-prediction
cancer-phylogenetics-prognostic-prediction PublicImproving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
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FISH_deconvolution
FISH_deconvolution Publiccode implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution
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- mutation-subsampling Public
CMUSchwartzLab/mutation-subsampling’s past year of commit activity - TUSV-INT Public
CMUSchwartzLab/TUSV-INT’s past year of commit activity - Sc-TUSV-ext Public
Sc-TUSV-ext: Tumor evolutionary tree reconstruction from single-cell DNA-seq data of single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV).
CMUSchwartzLab/Sc-TUSV-ext’s past year of commit activity - TUSV-ext Public
CMUSchwartzLab/TUSV-ext’s past year of commit activity - StudyDesignOptimization Public
CMUSchwartzLab/StudyDesignOptimization’s past year of commit activity - SimGenomeSc Public
Single-cell DNA-seq simulation with SNVs, CNAs and SVs for Sc-TUSV-ext. This is an extension of the bulk simulation done by Xuecong Fu, for TUSV-ext.
CMUSchwartzLab/SimGenomeSc’s past year of commit activity - MosaicSim Public
CMUSchwartzLab/MosaicSim’s past year of commit activity - SimGenome Public
Simulation of the somatic variations (structural variations, copy number variations and single nucleotide variations) in whole genome based on tumor phylogenetic trees. SimGenome is the simulation method used in TUSV-ext project.
CMUSchwartzLab/SimGenome’s past year of commit activity
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