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URL: http://github.com/biojava/biojava/commit/1206ace463fc42d6bd0d4a67a354514e877e0226

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Merge branch 'bugfixes-4.2'
2 parents fed00d0 + 62926e6 commit 1206ace

19 files changed

Lines changed: 1792 additions & 1094 deletions

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‎biojava-alignment/pom.xml‎

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<!-- Excluding demo package is required for avoiding namespace clashes
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(demo package is in all modules) for signing the jar. See issue #387 -->
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-jar-plugin</artifactId>
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<configuration>
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<excludes>
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<exclude>demo/**</exclude>
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</excludes>
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</configuration>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-jar-plugin</artifactId>
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<configuration>
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<excludes>
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<exclude>demo/**</exclude>
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</excludes>
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</configuration>
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</plugin>
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</plugins>
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</build>
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<dependencies>
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<!-- logging dependencies (managed by parent pom, don't set versions or
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scopes here) -->
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<dependency>
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<groupId>org.slf4j</groupId>
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<artifactId>slf4j-api</artifactId>
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</dependency>
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<!-- binding for log4j2, scope=runTime set in parent pom -->
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<dependency>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-slf4j-impl</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-api</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-core</artifactId>
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</dependency>
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<dependency>
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<groupId>org.biojava</groupId>
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<artifactId>biojava-phylo</artifactId>
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<groupId>org.slf4j</groupId>
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<artifactId>slf4j-api</artifactId>
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</dependency>
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<!-- binding for log4j2, scope=runTime set in parent pom -->
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<dependency>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-slf4j-impl</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-api</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-core</artifactId>
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</dependency>
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<dependency>
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<groupId>org.biojava</groupId>
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<artifactId>biojava-phylo</artifactId>
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<version>5.0.0-SNAPSHOT</version>
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</dependency>
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</dependency>
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</dependencies>
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</project>

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