URL: http://github.com/biojava/biojava/issues/1013
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Hi,
Been looking at the ontology module as it might be useful in my day job.
I tried parsing the latest GO flatfile at http://geneontology.org/docs/download-ontology/#go_basic and the parser handles it OK (ie it doesn't crash). But with the low number of tests, documentation and sample code it's hard to be confident that it's parsing everything correctly for use in production system.
Would it be worth giving this module a bit of attention? Specifically
Also, I'm interested in using Go annotation format files - http://geneontology.org/docs/go-annotation-file-gaf-format-2.2 - is a parser for this something that would belong in this module?
I'd be happy to take a stab at some of these tasks unless there are strong contrary opinions.