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URL: http://github.com/biojava/biojava-tutorial/tree/master/core

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README.md

The BioJava - Core Module

A tutorial for the core module of BioJava.

About

The core module of BioJava provides an API that provides
  • Basic operations with biological sequences
  • Reading and Writing of popular sequence file formats
  • Translate DNA sequences into protein sequences

Index

This tutorial is split into several chapters.

Chapter 1 - Quick Installation

Chapter 2 - Basic Sequence types

Chapter 3 - Reading and Writing sequences

Chapter 4 - Translating DNA and protein sequences.

License

The content of this tutorial is available under the CC-BY license, available here.

Please Cite

BioJava 5: A community driven open-source bioinformatics library
Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W. Rose, Anthony Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael Heuer, Matt Larson, Stephen K. Burley, & Jose M. Duarte
PLOS Computational Biology (2019) 15 (2):e1006791.
doi pubmed

Navigation: Home | Book 1: The Core Module

Next: Book 2: The Alignment Module
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